Gene Regulatory Networks

Publication Title: 
Ageing Research Reviews

This article proposes that behavioural advancement during mammalian evolution had been in part mediated through extension of total developmental time. Such time extensions would have resulted in increased numbers of neuronal precursor cells, hence larger brains and a disproportionate increase in the neocortex. Larger neocortical areas enabled new connections to be formed during development and hence expansion of existing behavioural circuits.

Author(s): 
Neill, David
Publication Title: 
Aging

Despite evidence from family studies that there is a strong genetic influence upon exceptional longevity, relatively few genetic variants have been associated with this trait. One reason could be that many genes individually have such weak effects that they cannot meet standard thresholds of genome wide significance, but as a group in specific combinations of genetic variations, they can have a strong influence.

Author(s): 
Sebastiani, Paola
Bae, Harold
Sun, Fangui X.
Andersen, Stacy L.
Daw, E. Warwick
Malovini, Alberto
Kojima, Toshio
Hirose, Nobuyoshi
Schupf, Nicole
Puca, Annibale
Perls, Thomas T.
Publication Title: 
Neurobiology of Aging

A number of neurological diseases are caused by mutations of RNA metabolism-related genes. A complicating issue is that whether under- or overfunction of such genes is responsible for the phenotype. Polyglutamine tract binding protein-1, a causative gene for X-linked mental retardation, is also involved in RNA metabolism, and both mutation and duplication of the gene were reported in human patients. In this study, we first report a novel phenotype of dPQBP1 (drosophila homolog of Polyglutamine tract binding protein-1)-mutant flies, lifespan shortening.

Author(s): 
Tamura, Takuya
Sone, Masaki
Nakamura, Yoko
Shimamura, Teppei
Imoto, Seiya
Miyano, Satoru
Okazawa, Hitoshi
Publication Title: 
Genesis (New York, N.Y.: 2000)

Aging and reproduction are two defining features of our life. Historically, research has focused on the well-documented decline in reproductive capacity that accompanies old age, especially with increasing maternal age in humans. However, recent experiments in model organisms such as worms, flies, and mice have shown that a dialogue in the opposite direction may be widely prevalent, and that signals from reproductive tissues have a significant effect on the rate of aging of organisms. This pathway has been described in considerable detail in the nematode Caenorhabditis elegans.

Author(s): 
Ghazi, Arjumand
Publication Title: 
Mechanisms of Development

It is commonly known that mental activity helps to maintain a healthy brain. Recent research has unraveled the underlying molecular mechanisms that explain why an active brain lives longer. These mechanisms involve the activation of a comprehensive transcriptional program that is triggered by enhanced synaptic activity and renders neurons resistant to harmful conditions. Functionally, this state of acquired neuroprotection may be achieved mainly via one mechanism, which is the stabilization of mitochondria.

Author(s): 
Bas-Orth, Carlos
Bading, Hilmar
Publication Title: 
Aging

Despite evidence from family studies that there is a strong genetic influence upon exceptional longevity, relatively few genetic variants have been associated with this trait. One reason could be that many genes individually have such weak effects that they cannot meet standard thresholds of genome wide significance, but as a group in specific combinations of genetic variations, they can have a strong influence.

Author(s): 
Sebastiani, Paola
Bae, Harold
Sun, Fangui X.
Andersen, Stacy L.
Daw, E. Warwick
Malovini, Alberto
Kojima, Toshio
Hirose, Nobuyoshi
Schupf, Nicole
Puca, Annibale
Perls, Thomas T.
Publication Title: 
Molecular Systems Biology

Many fundamental questions on aging are still unanswered or are under intense debate. These questions are frequently not addressable by examining a single gene or a single pathway, but can best be addressed at the systems level. Here we examined the modular structure of the protein-protein interaction (PPI) networks during fruitfly and human brain aging. In both networks, there are two modules associated with the cellular proliferation to differentiation temporal switch that display opposite aging-related changes in expression.

Author(s): 
Xue, Huiling
Xian, Bo
Dong, Dong
Xia, Kai
Zhu, Shanshan
Zhang, Zhongnan
Hou, Lei
Zhang, Qingpeng
Zhang, Yi
Han, Jing-Dong J.
Publication Title: 
PLoS genetics

Dietary restriction (DR), limiting nutrient intake from diet without causing malnutrition, delays the aging process and extends lifespan in multiple organisms. The conserved life-extending effect of DR suggests the involvement of fundamental mechanisms, although these remain a subject of debate. To help decipher the life-extending mechanisms of DR, we first compiled a list of genes that if genetically altered disrupt or prevent the life-extending effects of DR. We called these DR-essential genes and identified more than 100 in model organisms such as yeast, worms, flies, and mice.

Author(s): 
Wuttke, Daniel
Connor, Richard
Vora, Chintan
Craig, Thomas
Li, Yang
Wood, Shona
Vasieva, Olga
Shmookler Reis, Robert
Tang, Fusheng
de Magalh„es, Jo„o Pedro
Publication Title: 
Human Molecular Genetics

The SMARCA2 gene, which encodes BRM in the SWI/SNF chromatin-remodeling complex, was recently identified as being associated with schizophrenia (SZ) in a genome-wide approach. Polymorphisms in SMARCA2, associated with the disease, produce changes in the expression of the gene and/or in the encoded amino acid sequence. We show here that an SWI/SNF-centered network including the Smarca2 gene is modified by the down-regulation of REST/NRSF in a mouse neuronal cell line. REST/NRSF down-regulation also modifies the levels of Smarce1, Smarcd3 and SWI/SNF interactors (Hdac1, RcoR1 and Mecp2).

Author(s): 
Loe-Mie, Yann
Lepagnol-Bestel, Aude-Marie
Maussion, Gilles
Doron-Faigenboim, Adi
Imbeaud, Sandrine
Delacroix, HervÈ
Aggerbeck, Lawrence
Pupko, Tal
Gorwood, Philip
Simonneau, Michel
Moalic, Jean-Marie
Publication Title: 
Human Molecular Genetics

Studies of the major psychoses, schizophrenia (SZ) and bipolar disorder (BD), have traditionally focused on genetic and environmental risk factors, although more recent work has highlighted an additional role for epigenetic processes in mediating susceptibility. Since monozygotic (MZ) twins share a common DNA sequence, their study represents an ideal design for investigating the contribution of epigenetic factors to disease etiology.

Author(s): 
Dempster, Emma L.
Pidsley, Ruth
Schalkwyk, Leonard C.
Owens, Sheena
Georgiades, Anna
Kane, Fergus
Kalidindi, Sridevi
Picchioni, Marco
Kravariti, Eugenia
Toulopoulou, Timothea
Murray, Robin M.
Mill, Jonathan

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